Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs6692170 chr1:205074019 G/A 7.2E-5 288 23.23 27.73 21.9 KM Plot
KIRP rs66929873 chr1:235324545 T/A 0.000106 283 25.6 25.82 9 KM Plot
KIRP rs66935818 chr2:239108842 CT/C 3.25E-5 287 26 21.93 28.17 KM Plot
KIRP rs6699798 chr1:26556442 G/T 6.61E-5 286 25.93 27.75 13.17 KM Plot
KIRP rs67040724 chr6:27905509 T/C 2.21E-8 287 25.62 27.78 9.77 KM Plot
KIRP rs67101035 chr6:27798887 C/G 1.21E-8 289 25.63 26.37 9.77 KM Plot
KIRP rs6727633 chr2:189407771 A/G 6.71E-10 288 5.53 27.28 25.67 KM Plot
KIRP rs67297533 chr6:28141253 G/T 1.58E-8 287 25.58 29.43 9.77 KM Plot
KIRP rs67340775 chr6:28304384 A/C 0 289 25.58 26.77 9.38 KM Plot
KIRP rs6736311 chr2:100950599 C/G 1.92E-5 289 23.32 25.97 25.5 KM Plot
KIRP rs6736564 chr2:128478835 C/T 1.2E-6 288 26 22.57 8.47 KM Plot
KIRP rs6736576 chr2:100950854 C/T 1.92E-5 289 23.32 25.97 25.5 KM Plot
KIRP rs67381177 chr6:28411941 G/C 2.43E-8 282 25.57 28.02 9.77 KM Plot
KIRP rs6756449 chr2:128513614 C/T 1.33E-6 285 25.97 21.67 8.47 KM Plot
KIRP rs67575965 chr6:26196593 A/G 0.000138 285 25.5 26.58 20.02 KM Plot